Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs11007408 chr10:29327090 G/T 2.75E-9 500 31.8 30.38 29.28 KM Plot
THCA rs11007409 chr10:29328462 C/T 2.68E-9 501 31.8 30.13 29.28 KM Plot
THCA rs11007412 chr10:29335159 C/G 5.44E-7 503 31.8 30.38 27.1 KM Plot
THCA rs11017097 chr10:131933983 C/T 1.18E-5 502 31.47 33.3 27.18 KM Plot
THCA rs11019400 chr11:88070858 A/G 0 488 31.33 35.27 5.23 KM Plot
THCA rs11024843 chr11:2999919 G/A 8.88E-5 502 31.6 30.97 33.62 KM Plot
THCA rs11039361 chr11:47760810 A/T 1.67E-10 491 31.57 31.53 27.63 KM Plot
THCA rs11039369 chr11:47775952 A/G 1.1E-9 503 31.47 32.77 27.63 KM Plot
THCA rs11039370 chr11:47778125 C/T 1.69E-9 492 31.57 30.95 27.63 KM Plot
THCA rs11039482 chr11:48009074 C/T 3.29E-7 498 31.57 32.27 33.7 KM Plot
THCA rs11050584 chr12:9528070 G/T 2.22E-5 502 31.83 27.72 8.1 KM Plot
THCA rs11055903 chr12:14445548 C/T 4.69E-5 503 32.45 36.73 31.4 KM Plot
THCA rs11086142 chr20:61479137 G/A 5.6E-5 495 31.02 33.7 37.48 KM Plot
THCA rs11111942 chr12:104629144 T/C 1.59E-5 494 31.88 28.85 23.83 KM Plot
THCA rs111255903 chr20:61495526 C/T 8.54E-5 495 31 33.78 37.48 KM Plot